smslib package

Submodules

smslib.api module

smslib.api.get_observables_data(observables=None, experiment_id=None)

Get the output data from parquet files generated from a given vEcoli simulation as a dataframe containing all simulation timepoints.

Parameters:
  • observables (list[str] | None) – list of observables(dataframe columns) to include. If None is passed, defaults to all columns.

  • experiment_id (str | None) – the experiment ID for the simulation that you wish to query. If None is passed, defaults to the exampled pinned simulation: “sms_single”.

Return type:

polars.DataFrame

Returns:

A dataframe containing all simulation timepoints.

smslib.tests module

Module contents